PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH88682.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 220aa MW: 23776.9 Da PI: 10.1539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH88682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	195	217	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ + H + H MCH88682.1 195 TCHKCGEQFNKWEAAEAHHLSkH 217 7*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MPTVWFSLKK SLHCKSEPSD VHDPQTRKHL STILTKRGGR SGCSRSIANL KDVIHGSKRH 60 IEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITGFQ EGVGNNASGS SSXXXXXXXX 120 XXXTFVGTLR PGTPGPGGHP TMHYFNPSFR TSSTPPRKSP FLLSEGSGFH GAAAGVHSSN 180 RMSLETDSNG SSTVTCHKCG EQFNKWEAAE AHHLSKHAGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	2e-52	C2H2 family protein