PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH88781.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 235aa    MW: 26488.4 Da    PI: 10.125
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH88781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.2e-2444152199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.....E-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.....ldgr 87 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F      l+++
  MCH88781.1  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIwqvilLSKN 140
                 99*****************************8544444..48***********************************************9777755566 PP

                 SEE..EEEEE-S CS
          B3  88 sefelvvkvfrk 99 
                 ++ +l+++++r+
  MCH88781.1 141 DKNQLLLGIRRA 152
                 777788888876 PP
2Auxin_resp75.71.3e-25177235158
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserr 58 
                 aahaa+t+s F+++YnPra++seFv++++k++ka++ ++vsvGmRf+m fete+ss rr
  MCH88781.1 177 AAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRR 235
                 79*********************************9789****************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MHADVETDEV YAQMTLQPLN AQEQKEAYLP AELGTPSKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFSQQPP AQELIARDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWQVILLSKN DKNQLLLGIR RASRPQTVMP SSVLSSDSMH LGLLAAAAHA  180
AQTNSRFTIF YNPRACPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-144ARF family protein