PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH88990.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20448.3 Da    PI: 5.1818
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH88990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.6e-221157349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ++++  rqvtfskRr+g++KKA+ELS+LC+aev +++fs+ +k y +
  MCH88990.1 11 VKDTYTRQVTFSKRRTGLFKKANELSILCGAEVVIVVFSPGNKPYSF 57
                678999**********************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MGRRKIEIEM VKDTYTRQVT FSKRRTGLFK KANELSILCG AEVVIVVFSP GNKPYSFGHP  60
GVDVVAAKYL QQDPKSCDSQ GDPSSDASNM DELNLELAEV LDQICEGEKE AETRDEILKQ  120
NDMTTLSELE ELRDSYKELQ DWVKLRLSDL KISEYMMLLA KEPVVGVQAK SAKNRNRRKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-37M-type_MADS family protein