PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH89461.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 338aa MW: 37394.3 Da PI: 10.0896

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH89461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.5e-16	67	156	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++ + + ++ +qCk++++ ++k+yk +k+ + ++s++p++d+l+ MCH89461.1 67 CWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVngreDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGVTTSKWPFYDRLD 156 7***********************************97544455578999***************9999999999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MDDDDEIHSN PSPLSGSPVS SPGAIGRISV TVAAPAPESH PATNSYALAL PIQNQVRGNN 60 GGGREDCWSE GATAVLIEAW GERYMELSRG NLKQKHWKEV AEIVNGREDY LKAPKTDIQC 120 KNRIDTVKKK YKSEKAKIAA GGGVTTSKWP FYDRLDQLIG PTAKITGSTS AGNSNLPPHK 180 VPLGIPVGLR AGGVANQFNS QKKNTKPQPQ LQPQLNYQKV QLRPRVLAVD SXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX VMNSNAAKGT EGRKKGWGSA VRELTHAIVK FGEVYEQAET 300 SKLQQVVEME KQRMKFAKDL ELQRMQFFMK TQVEISQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-52	Trihelix family protein