PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH89709.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family Nin-like
Protein Properties Length: 243aa    MW: 26650.2 Da    PI: 9.5159
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH89709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK94.86.1e-30105155252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  MCH89709.1 105 EKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKV 155
                 79***********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
SSEQQLLLDN LSDTMRRICK SLRTVSEGEL RGIEGSQDGF LKENISGFFP MSKGNSQIAF  60
STGDPDLFQM PLMAANLKNN GIQGSHSQVT SESRKQAEKR RNAVEKNVSL SVLQQYFSGS  120
LKDAAKKIGV CPTTLKRICR QHGISRWPSR KINKVNRSLK KIQTVLDSVQ GVEGVLKFDP  180
HTGGFVAGGS IIEQIGTHNK TLMFPEKSSV ENSTIKLEDD GVLISNSCEG DLKKDNNASS  240
VDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.11e-61Nin-like family protein