PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH90332.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 235aa    MW: 26824.7 Da    PI: 8.7203
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH90332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.51.9e-172622791
        FAR1 27 eitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                e+++++f C ++g++++++++     ++r++ ++gCka+l+vk+++dgkw+v+++++eHnHel p
  MCH90332.1  2 EFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASLHVKRRQDGKWYVYSFVKEHNHELLP 62
                68899**********999877....9************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
KEFIDAKFSC IRYGNKQQSD DAINPRPSPK IGCKASLHVK RRQDGKWYVY SFVKEHNHEL  60
LPAQAHFFRS HRNSDPLSND VRMRRRKNST AGVDLNEEHR LRNVFWVDSK GLEDFGYFSD  120
VVSFDTTYFT SKYKIPLVLF VGVNHHMQPT LLGCALIADE TVFTFAWLLQ TWFIAMGERA  180
PQVILTDQND ALKAAVAART NLKRDGGSWL IGLNLEILSG SNPCMMIEQV GCQLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17285RNSDPLSNDVRMRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.12e-90FAR1 family protein