PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH92150.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 178aa MW: 20320.3 Da PI: 4.3404

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH92150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	140.5	1.7e-43	17	176	1	161
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+ A+ v+++++ + L+ l +++s +gd++qR++ayft +L a+l+ + s y+ l ++t +ee+ a++ ++ vsP+++f+h+taN MCH92150.1 17 LIHLLLTTATSVDENNFDSSLENLTDLYQIVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPT----IDEEFLAFTDLYRVSPYYQFAHFTAN 111 689**************************************************99999998877777....6899999999************ PP GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleet 161 q Ilea+e+e + +H+iDfd+s+G+QWp+L+q+L++++ +++ slRiTg+g+ + ++l+et MCH92150.1 112 QVILEAFEKEeeknnRSIHVIDFDVSYGFQWPSLIQSLSEKAtsGNKISLRITGFGK----NLKZLQET 176 ****9988877889******************99856667*******....66666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MLRKNTLNIE DSNGLPLIHL LLTTATSVDE NNFDSSLENL TDLYQIVSLT GDSVQRVVAY 60 FTDGLTAKLL TKKSPFYEML MEEPTIDEEF LAFTDLYRVS PYYQFAHFTA NQVILEAFEK 120 EEEKNNRSIH VIDFDVSYGF QWPSLIQSLS EKATSGNKIS LRITGFGKNL KZLQETES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-27	GRAS family protein