PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH92439.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 393aa MW: 44570.9 Da PI: 4.6404

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH92439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	206.4	1.6e-63	163	392	1	232
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+e L++cA+av+++d+e +++++++l++++s g+p++Rl ay++eAL +++a+s+s++yk+l++se + e l+++++++e++P++kf+++ aN MCH92439.1 163 LKEMLYTCAKAVDENDMETIEWMVTELRKIVSILGNPVERLGAYMLEALVSKMASSGSTIYKSLKCSEPT---GNELLSYMHVLYEICPYFKFGYMSAN 258 5789***************************************************************9...99******************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI ea+++e++vHiiDf+i+qG+QW++L+qaLa Rp+ rL+ +A++++vpfefn+ v ++++le++++ MCH92439.1 259 GAIAEAMKEESQVHIIDFQITQGTQWVSLIQALARRPGXXXXXXXXXXXXXXXXxxXXXXXXXXXGRLSTLAQSCHVPFEFNA-VRVPASEVQLEDFEL 356 *********************************88776666665554444568889999999*************.7999******* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvk 232 ++gEa+aVn++l+lh+++desv+++++rd++L+l k MCH92439.1 357 RHGEAVAVNFALMLHHVPDESVNIHNHRDRLLRLAK 392 *******************************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
FYVEPVQNLD SYGLPSSENI ENYSSSDNSS XXXXXXXXXX XXXXTFESAS TSNNSFPYQN 60 SPSTLSFSPN NSPVSKLESN SYVLRPQHSL EFVNGSPEDD DSYLRHDLDD LRHKMLELES 120 VMLGPNADML DIYDADVKQE SASFLLEAEK WKKNMEMVSR GDLKEMLYTC AKAVDENDME 180 TIEWMVTELR KIVSILGNPV ERLGAYMLEA LVSKMASSGS TIYKSLKCSE PTGNELLSYM 240 HVLYEICPYF KFGYMSANGA IAEAMKEESQ VHIIDFQITQ GTQWVSLIQA LARRPGXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXGRLSTLA QSCHVPFEFN AVRVPASEVQ LEDFELRHGE 360 AVAVNFALML HHVPDESVNI HNHRDRLLRL AKH

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

FYVEPVQNLD SYGLPSSENI ENYSSSDNSS XXXXXXXXXX XXXXTFESAS TSNNSFPYQN  60
SPSTLSFSPN NSPVSKLESN SYVLRPQHSL EFVNGSPEDD DSYLRHDLDD LRHKMLELES  120
VMLGPNADML DIYDADVKQE SASFLLEAEK WKKNMEMVSR GDLKEMLYTC AKAVDENDME  180
TIEWMVTELR KIVSILGNPV ERLGAYMLEA LVSKMASSGS TIYKSLKCSE PTGNELLSYM  240
HVLYEICPYF KFGYMSANGA IAEAMKEESQ VHIIDFQITQ GTQWVSLIQA LARRPGXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXGRLSTLA QSCHVPFEFN AVRVPASEVQ LEDFELRHGE  360
AVAVNFALML HHVPDESVNI HNHRDRLLRL AKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-100	GRAS family protein