PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH92653.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 414aa MW: 45558.9 Da PI: 4.4456

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH92653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	266.9	6.8e-82	180	414	2	238
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL+ecA a+s+g+ +a+a++ l++++s +gdp +R+aay++e+Laarla+s++++ykal+++e + ss++laa+++++ev+P++kf++++aN MCH92653.1 180 KQLLYECASALSEGNEVKASAMIDDLRQMVSIQGDPSTRIAAYMVEGLAARLASSGKSIYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFIAANG 275 589***************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aI ea++ +++vHiiDfdi+qG Q+++L+q+LasRp++pp +R+Tgv++pes+ s l+ +g+rL+k+Ae lg+pfef++ va++ + +++++L+++ MCH92653.1 276 AIAEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPFVRLTGVDDPESVqrSVGGLSIIGQRLEKLAEVLGLPFEFRA-VASSSSVVTPSMLNCH 373 ***********************************************99889999*******************.799********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 pgEa++Vn+++qlh++ desvs+ +erd++L++vksl+Pk+ MCH92653.1 374 PGEAIVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKL 414 *************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MYMNDSYSSE SYKKYFLDSP TEELIEPSSS GISGNSVHAD SDSSYQLRAN SGGSMVTDNP 60 FDNYVSSTRN RDAYQSNFQS DLFENESPDC FEFDGEMRLK LQELERALLG DNNDDCDDDG 120 ENIFRTVQSM DIDPDFADCA NPAQNMSLHD SPKESLSSDS NLSCSSSCKE ISQKSPRTPK 180 QLLYECASAL SEGNEVKASA MIDDLRQMVS IQGDPSTRIA AYMVEGLAAR LASSGKSIYK 240 ALRCKEPPSS DRLAAMQILF EVCPCFKFGF IAANGAIAEA IKDDKKVHII DFDINQGSQY 300 ITLIQTLASR PGKPPFVRLT GVDDPESVQR SVGGLSIIGQ RLEKLAEVLG LPFEFRAVAS 360 SSSVVTPSML NCHPGEAIVV NFAFQLHHMR DESVSTVNER DQLLRMVKSL NPKL

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MYMNDSYSSE SYKKYFLDSP TEELIEPSSS GISGNSVHAD SDSSYQLRAN SGGSMVTDNP  60
FDNYVSSTRN RDAYQSNFQS DLFENESPDC FEFDGEMRLK LQELERALLG DNNDDCDDDG  120
ENIFRTVQSM DIDPDFADCA NPAQNMSLHD SPKESLSSDS NLSCSSSCKE ISQKSPRTPK  180
QLLYECASAL SEGNEVKASA MIDDLRQMVS IQGDPSTRIA AYMVEGLAAR LASSGKSIYK  240
ALRCKEPPSS DRLAAMQILF EVCPCFKFGF IAANGAIAEA IKDDKKVHII DFDINQGSQY  300
ITLIQTLASR PGKPPFVRLT GVDDPESVQR SVGGLSIIGQ RLEKLAEVLG LPFEFRAVAS  360
SSSVVTPSML NCHPGEAIVV NFAFQLHHMR DESVSTVNER DQLLRMVKSL NPKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-136	GRAS family protein