PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH93409.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 208aa MW: 23761.2 Da PI: 5.3588

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH93409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	144.7	9e-45	27	206	192	374
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 ++++++++E++aV ++++l ++s +le v++++++++P v+vv+e ea+hns+sF++rf+eal y+sa+fd+le + ++++r+ +E +++ MCH93409.1 27 DHFKIDSDETVAVYSQFALRCKIQQSDQLET----VMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAFFDCLEDCMKGDEKNRMIMESMYF 121 5678999**********999988888887....************************************************************ PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + i+n va egaer+ r+ + Wr+ +++ G+ + +ls qa+l+ ++++ + + + + ++l+ gWk+ p+ svS+W+ MCH93409.1 122 SHGIRNNVAEEGAERKSRNVKIDVWRAFFSRYGMVETELSMISLYQAELVAKRFScGSSCTFDMNGHCLLVGWKGTPINSVSVWK 206 ***************************************************9888999999*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
PLELLKITAI VSGNTDTSKL AVEDTEDHFK IDSDETVAVY SQFALRCKIQ QSDQLETVMR 60 VIRTINPIVM VVAEIEANHN SKSFVNRFIE ALFYFSAFFD CLEDCMKGDE KNRMIMESMY 120 FSHGIRNNVA EEGAERKSRN VKIDVWRAFF SRYGMVETEL SMISLYQAEL VAKRFSCGSS 180 CTFDMNGHCL LVGWKGTPIN SVSVWKFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	3e-29	GRAS family protein