PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH93635.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 145aa    MW: 16047.4 Da    PI: 8.7425
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH93635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.53.5e-41201191100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe +r da++s+vyeA+ r+rdPvyG++g i++lqq++++l+ael+++++
  MCH93635.1  20 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISTLQQEVQSLQAELHAIRA 118
                 7**********************************************************************************************9988 PP

      DUF260 100 e 100
                 e
  MCH93635.1 119 E 119
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MGRKHFHGQV VGTTLNTITP CAACKLLRRR CAEECPFSPY FSPHEPHKFA AVHKVFGASN  60
VSKLLLEVPE GQRADAANSM VYEANLRLRD PVYGCMGAIS TLQQEVQSLQ AELHAIRAEI  120
LKYKYREAAS FISSQVSIPT NANSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-74LBD family protein