PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH93725.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 117aa    MW: 12765.8 Da    PI: 8.8812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH93725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.77.8e-3314103187
      DUF260   1 aCaaCkvlrrkCakd.Cvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                 +C aCk+lrrkC+k+ C++apyf ++   +++fa+vhk+FGasn  kll ++p ++r da+ +l+yeA ara dPvyG+v++i++lqqq 
  MCH93725.1  14 PCGACKFLRRKCVKGcCIFAPYFESSGqgSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQF 103
                 7*************9789*****7744257**********************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MDLRYGGRDG GDGPCGACKF LRRKCVKGCC IFAPYFESSG QGSAHFAAVH KVFGASNAAK  60
LLMRIPVHKR LDAVVTLCYE ALARATDPVY GCVAHIFALQ QQFIFRAYNG APLNYND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-44LBD family protein