PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH93919.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 256aa    MW: 28400 Da    PI: 5.7677
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH93919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.98.6e-55791821101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw +q   iek+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t tdifdflvdiv
  MCH93919.1  79 QLQAFWGNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIV 177
                 89****9999999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr++l
  MCH93919.1 178 PREDL 182
                 **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MDPQGHGQNP SMGVVGGGQM ATYGSNPYQP NHLTGSPGMV VPNVGNIQPG GQPDGTQLGQ  60
HQLAYQHIHQ QQQQQQQQQL QAFWGNQYQE IEKVTDFKNH SLPLARIKKI MKADEDVKMI  120
SAEAPVVFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITGTDIF DFLVDIVPRE  180
DLKDEVLASI PRGPMPVGGP ADGIPYCYMP PQNAQQAGNP GLMMHNPNMY APQSHPYMAP  240
QMWPQPSEQQ PSPSDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.31e-81NF-YC family protein