PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH94832.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 353aa MW: 39026.1 Da PI: 9.4403

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH94832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	157.5	1.2e-48	189	353	1	166
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++ L+ cA+ +ss+d + a++lL+++++++sp gd qRla++f++A++arla++++++y al ++++s ++ ++a++++ ++P+ k++ + aN MCH94832.1 189 LRTMLILCAQSISSDDRATAKELLKQIRQHSSPLGDGSQRLAHCFANAIEARLAGTGTQIYTALYSKRNS---AADMVKAYQMYISACPFKKLAIIFAN 284 5789********************************************************99999888...89******************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++Il+ +++ e++Hi+Df+i +G+QWpaL+ L++Rp+gpp+lR+Tg++ p++g +e+++etg rLa MCH94832.1 285 HTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGfrPAERVQETGLRLA 353 *************************************************9***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MNGYGTTTTS SSNFGVTNSG VLVSSRDGFP DSNLLSKSES VLQFERGVEE ANKFLPKANP 60 LVIDLENNHP FIPSFRKVPR EVVVKTESSE REHFSVESRG RKNHERGDET DLQDERSNKQ 120 SAVYTDDSEI SELFDKVLLG TGCRKDGAPK EEKPNEQVTG VQQKEEANNS GGGKSRAKKQ 180 GNKKGVVDLR TMLILCAQSI SSDDRATAKE LLKQIRQHSS PLGDGSQRLA HCFANAIEAR 240 LAGTGTQIYT ALYSKRNSAA DMVKAYQMYI SACPFKKLAI IFANHTILNL AKEVETLHIV 300 DFGIRYGFQW PALIYRLSKR PGGPPKLRLT GIELPQPGFR PAERVQETGL RLA

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MNGYGTTTTS SSNFGVTNSG VLVSSRDGFP DSNLLSKSES VLQFERGVEE ANKFLPKANP  60
LVIDLENNHP FIPSFRKVPR EVVVKTESSE REHFSVESRG RKNHERGDET DLQDERSNKQ  120
SAVYTDDSEI SELFDKVLLG TGCRKDGAPK EEKPNEQVTG VQQKEEANNS GGGKSRAKKQ  180
GNKKGVVDLR TMLILCAQSI SSDDRATAKE LLKQIRQHSS PLGDGSQRLA HCFANAIEAR  240
LAGTGTQIYT ALYSKRNSAA DMVKAYQMYI SACPFKKLAI IFANHTILNL AKEVETLHIV  300
DFGIRYGFQW PALIYRLSKR PGGPPKLRLT GIELPQPGFR PAERVQETGL RLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-118	GRAS family protein