PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH95022.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

YABBY

Protein Properties

Length: 127aa MW: 14177.4 Da PI: 9.3792

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH95022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	79.5	1e-24	15	127	6	133
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 + +++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ + + +++++h +l + + +k+ ++s+s MCH95022.1 15 TDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTPTVDH-----------TLTLQ----GIYSSKKGHPSSSSXXX-XXXX 97 5679*********************************999888888888888887...........22222....23344444444444443.3566 PP YABBY 105 edeevprvpp.virPPekrqrvPsaynrfi 133 d +p++pp v++PPek+ r Psaynrf+ MCH95022.1 98 XDSLSPKPPPfVVKPPEKKHRLPSAYNRFM 127 77778888888****************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence
MNQEEKVTMD LIPATDQHLC YVRCNFCNTV LAVGIPCKRL LDTVTVKCGH CSNLSFLTTR 60 PPNSKTPTVD HTLTLQGIYS SKKGHPSSSS XXXXXXXXDS LSPKPPPFVV KPPEKKHRLP 120 SAYNRFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	4e-28	YABBY family protein