PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH95258.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 248aa    MW: 28405.7 Da    PI: 6.5289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH95258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.5e-134247141374
        GRAS 141 slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLk 229
                 +l++T ++s++ +        + e t++ L ++A+++g+++  +    k le+l ++e+++ +     +  la nl++ l ++   +   ++   e+Lk
  MCH95258.1   4 RLKLTSIKSSDDEnssdqCVWNFEDTKRELCEYAKSCGLKLMVEE---KGLEEL-VSEIKIMNkrgarKVFLAFNLMIGLSHMGMVRNRRKN-ALEFLK 97 
                 799****99776677766677899***************998776...778887.7777777766666888999999999999866666666.778887 PP

        GRAS 230 ....lvkslsPk.vvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerl 319
                     l+k+  +k ++++ + +   ++ ns +F   f   l +y al++s+e++++++  ++ri  E  ++++ i+++   ++ e   ++++ +  ++ +
  MCH95258.1  98 vaedLIKNCGSKgMITFGDGDvfEKLkNSLNFKSFFEGNLVHYKALLESIESQFSEKFsKARIACEVLFVAPCISSCDWLQTWE---EMKSDGDFQAEI 193
                 222245556666356888888533447999********************9999888559999999999999999876666665...777777777777 PP

        GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                 +   +++ +ls+++ +++k +lr ++ s   r+e  ++++lvl Wk+ +L+ +S W+
  MCH95258.1 194 R---LESGSLSKNVLMEVKEVLRGCEsSYQARIEgGNENELVLEWKGTQLLRFSIWK 247
                 6...7899******************5555666666799*****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MNKRLKLTSI KSSDDENSSD QCVWNFEDTK RELCEYAKSC GLKLMVEEKG LEELVSEIKI  60
MNKRGARKVF LAFNLMIGLS HMGMVRNRRK NALEFLKVAE DLIKNCGSKG MITFGDGDVF  120
EKLKNSLNFK SFFEGNLVHY KALLESIESQ FSEKFSKARI ACEVLFVAPC ISSCDWLQTW  180
EEMKSDGDFQ AEIRLESGSL SKNVLMEVKE VLRGCESSYQ ARIEGGNENE LVLEWKGTQL  240
LRFSIWKN