PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH95283.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 315aa    MW: 36759.5 Da    PI: 7.0443
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH95283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.2e-171457649
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +  rq tf  R+ng++KK +ELS+LCd++v+vi+++++ + +e+
  MCH95283.1 14 EKSRQKTFLTRKNGLMKKVNELSTLCDVDVCVILYAPKFEGQEF 57
                567999******************************98766665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGRRRISMEL VQKEKSRQKT FLTRKNGLMK KVNELSTLCD VDVCVILYAP KFEGQEFVEP  60
ETWPKDTKEV QRVLQKYYNT TIDRRLKIYD IQEYFKEKMK KVESEIFNVH KKMLKVMYPT  120
WNESFNSFGE EQLRLFASML DSKLDACNQK MNMLRGDHNG KALNESHKVD KPNSNTPYLT  180
SNPSSYFNLM QNNFSIISDK NPLEFWPLEL GQSSQPSSMF SGAQASYQME SYPYKHVDAN  240
WADQVDTNVT YDPKINTKMK DGAQNDENLS SYYYNGNTPA MQSYDIAMQT LPFQNLPNLP  300
HGFQLNGFYD IDGRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-26M-type_MADS family protein