PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH95359.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 386aa MW: 44274.8 Da PI: 6.2323

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH95359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.2	3.3e-26	81	175	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d MCH95359.1 81 KWTDKMVRLLITAVSYIGEDGSSEGggggrkkfavlQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLD 175 7****************99975445667788888********************************************5589888887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MNQHQAHPCQ GSSVHSSIHD GFPLTMGTLP NCDQTMSINE FGQGDRNKHS GSEEDEPEEG 60 GDGHHQEGGR GKKGTPWQRV KWTDKMVRLL ITAVSYIGED GSSEGGGGGR KKFAVLQKKG 120 KWKSISKVMA ERGYRVSPQQ CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDFL 180 NEKEKDDVRK ILNSKHLFYE EMCSYHNCNR LHLPHDPALQ RSLQIALRNR DDHDNDDVRR 240 SYHDDHDEDD HDMETDDHDE FEENFASHGD SRGIFGGLGG TTKRLRQGQG HEDATTFGNS 300 INCQEYHKSS HPHGPTVQTD GNQALPENMR AAWLQKQWLD SRSVQLEEQK LQIQVEMLEL 360 EKQRLKWERF SKKQDRELEK FKLEND

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MNQHQAHPCQ GSSVHSSIHD GFPLTMGTLP NCDQTMSINE FGQGDRNKHS GSEEDEPEEG  60
GDGHHQEGGR GKKGTPWQRV KWTDKMVRLL ITAVSYIGED GSSEGGGGGR KKFAVLQKKG  120
KWKSISKVMA ERGYRVSPQQ CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDFL  180
NEKEKDDVRK ILNSKHLFYE EMCSYHNCNR LHLPHDPALQ RSLQIALRNR DDHDNDDVRR  240
SYHDDHDEDD HDMETDDHDE FEENFASHGD SRGIFGGLGG TTKRLRQGQG HEDATTFGNS  300
INCQEYHKSS HPHGPTVQTD GNQALPENMR AAWLQKQWLD SRSVQLEEQK LQIQVEMLEL  360
EKQRLKWERF SKKQDRELEK FKLEND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-130	Trihelix family protein