PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH95425.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

RAV

Protein Properties

Length: 378aa MW: 41041.3 Da PI: 9.7057

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH95425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.9	5.8e-14	57	105	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g MCH95425.1 57 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 105 89**9888.8*****3.....5******99***********98 PP
2	B3	89.8	2.1e-28	187	295	1	92
EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L++gD v F MCH95425.1 187 FEKTVTPSDVGKLNRLVIPKQHAEKHfplnavavavsgegispSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRF 285 99*************************99999999986666333448899*******************************************99 PP EE-SSSEE.. CS B3 83 kldgrsefel 92 ++ +++l MCH95425.1 286 FRSTGPDRQL 295 8664455555 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
TTTTSNDSLS VSLIPTKLSP PPTTNTLSRV GSGASAVVDP EICGGSGEAE SRKLPSSKYK 60 GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAARAYDIAA LRFRGKDAVT NSKTLTGASN 120 DTDEAEAEFL NSHSKSEIVD MLRKHTYDDE LKQSMRDTCG GRQRRNGDSA GAASRGACDV 180 KAREQLFEKT VTPSDVGKLN RLVIPKQHAE KHFPLNAVAV AVSGEGISPS VAAAKGLLLN 240 FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DAVRFFRSTG PDRQLYIDCK 300 ARSSSVVGGE VDSNKTGGLF ISVRPVVEPV QMVRLFGVNL LKLPGSDGTV GGSCNGKRKE 360 MEFFALECTK KPKIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

TTTTSNDSLS VSLIPTKLSP PPTTNTLSRV GSGASAVVDP EICGGSGEAE SRKLPSSKYK  60
GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAARAYDIAA LRFRGKDAVT NSKTLTGASN  120
DTDEAEAEFL NSHSKSEIVD MLRKHTYDDE LKQSMRDTCG GRQRRNGDSA GAASRGACDV  180
KAREQLFEKT VTPSDVGKLN RLVIPKQHAE KHFPLNAVAV AVSGEGISPS VAAAKGLLLN  240
FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DAVRFFRSTG PDRQLYIDCK  300
ARSSSVVGGE VDSNKTGGLF ISVRPVVEPV QMVRLFGVNL LKLPGSDGTV GGSCNGKRKE  360
MEFFALECTK KPKIIGAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	373	KRKEMEFFALECTKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-139	RAV family protein