PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH96395.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 177aa    MW: 20096.2 Da    PI: 4.4102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH96395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-16143145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + +W++eEd  l++++k  G++ W+ Ia+ ++ gRt++++k++w+
       MCH96395.1  1 KESWSEEEDGVLIEVHKIVGNK-WAEIAKSLP-GRTENSIKNHWN 43
                     578*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
KESWSEEEDG VLIEVHKIVG NKWAEIAKSL PGRTENSIKN HWNATKRSQN AKMRQNRRNS  60
LKGTLLQKYI SEVTAAKEAE KELMNIENQQ NFESSESDYN SEGLATPEDE IEDYVPMMFN  120
GTADYGMASG SGTTMNYDFG SYGMASGSGT TMNYEFYPEV PMKQELDLME MIYRNNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-27MYB family protein