PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH97898.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 283aa MW: 31817.7 Da PI: 5.7808

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH97898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	27	72	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ede lv++v+++G ++W+ I++ ++ gR++k+c++rw + MCH97898.1 27 KGSWSPQEDETLVKLVNEYGARNWSVISNGIP-GRSGKSCRLRWCNQ 72 799***************************.*********985 PP
2	Myb_DNA-binding	54.2	3.3e-17	81	123	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tI+r ++ gRt++ +k++w++ MCH97898.1 81 PFTPAEDNIIIQAHAVHGNK-WATISRLLP-GRTDNAIKNHWNST 123 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
VQDAMISANS NSNSNGGGVD ENGDKVKGSW SPQEDETLVK LVNEYGARNW SVISNGIPGR 60 SGKSCRLRWC NQLSPDVQHR PFTPAEDNII IQAHAVHGNK WATISRLLPG RTDNAIKNHW 120 NSTLRRRRTE APVNPIMPVV SSTVNIGKRA SNMYDGYNNG LLDLGYGYKR QCVENNNGSR 180 DGEETVTEEE DAGNGVTVMT SLSLFPPGEK LMKEEKEKKE KERDFDFDDN LKLLGNDNLR 240 SIIQRMIAEE VRNYVDNMRL DGFQLGTXXX XXXXXXXXFF NFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-52	MYB family protein