PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH98606.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 143aa    MW: 16355.1 Da    PI: 4.3266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH98606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171257148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
       MCH98606.1 12 RGNISDEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 57
                     7899******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MVMTKNKPNI KRGNISDEEE DLIIRLHKLL GNRWSLIAGR LPGRTDNEIK NYWNSHLCKK  60
VNQIGEKPET STAQETTAQD NVAGDSGMLE NKDSVNGSID SDVIFDVNEF LDFSTEESFG  120
FDWVNKFLEL DQIQFLENTE RSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-31MYB family protein