PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH99420.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 246aa    MW: 28171.3 Da    PI: 9.5828
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH99420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.46.6e-0565124154
                 TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl....gLterqVkvWFqNrRak 54 
                 r++Rt ++++ +e +e++   ++ +  +a++ +  A+kl    ++t +q k+W  Nr+ak
  MCH99420.1  65 RKRRTIMNDKMVELMERALLDEPDMqrNAASLQSWADKLsqhgEVTPSQLKNWLNNRKAK 124
                 7899999999999999999986655115567788888888888****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MERLSKVVVD ETLEDEKVES LQRRKRKRTI MNDKTVELME SSLLDEPDMQ QNELENEKVG  60
PLQKRKRRTI MNDKMVELME RALLDEPDMQ RNAASLQSWA DKLSQHGEVT PSQLKNWLNN  120
RKAKLARTTK DSSVPDKQKG PVRVSSDSPD NLGLLDIVRQ RAVIVNVRGE EIGKGRVVQV  180
NGKWYGKKLE ELGAYVMDVY ELHADKGMKL PFPSEATGTT FAEAEKKLGA MRVLWDSRRI  240
LVLQSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328RRKRKR