PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH99753.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 322aa    MW: 36113.3 Da    PI: 5.3594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH99753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.65.7e-80643211259
        GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l+e+Ll cA+avs+gd   a+  + + l +++s +gdp+qRl ay++e+L+arl +s                          ++++++P++kf+++ a
  MCH99753.1  64 LKEVLLLCAQAVSDGDIPTARGWMDNvLVKMVSVAGDPIQRLSAYLLEGLRARLESSXXXXXXXXXXXXX---XXXXXXXXXXVLYQICPYFKFAYISA 159
                 5789******************998625677*************************55555544444444...47777888899*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 N  I ea+++e+r+HiiDf+i qG+QW+ L+qaLa+Rp+gpp +RiTgv++++s+  +   l+ +ger++++A+++gvpfef+  +a +  +++ e+L+
  MCH99753.1 160 NAVISEAMANESRIHIIDFQIAQGTQWLLLIQALANRPGGPPFIRITGVDDSQSFhaRGGGLQIVGERISDYAKSCGVPFEFHN-TAMSGCEVQRENLK 257
                 ***************************************************9999889999***********************.89999********* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                 ++pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e
  MCH99753.1 258 IRPGEALAVNFPYFLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVE 321
                 **************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MSSVDDGHDL KHKLRELENS LLGSDDFDIV DSYGNCMETR LHGASPSAKY DWDLIAENIQ  60
KLDLKEVLLL CAQAVSDGDI PTARGWMDNV LVKMVSVAGD PIQRLSAYLL EGLRARLESS  120
XXXXXXXXXX XXXXXXXXXX XXXVLYQICP YFKFAYISAN AVISEAMANE SRIHIIDFQI  180
AQGTQWLLLI QALANRPGGP PFIRITGVDD SQSFHARGGG LQIVGERISD YAKSCGVPFE  240
FHNTAMSGCE VQRENLKIRP GEALAVNFPY FLHHMPDESV SIENHRDRLL RLVKSLSPKV  300
VTLVEQESNT NTSPFFHRFV ET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-128GRAS family protein