PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI01158.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 237aa MW: 26070.1 Da PI: 9.9772

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI01158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.8	1.5e-19	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W+ I++ ++ gR++k+c++rw + MCI01158.1 5 KGPWSPEEDEALQKLVEKHGPRNWSIISKSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	54.5	2.6e-17	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ MCI01158.1 59 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 101 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDRIKGPWSP EEDEALQKLV EKHGPRNWSI ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF 60 TPEEDDTIIR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCCSSM XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXS PGSPSGSDVS ESSVPIVNSS HVYRPVPTRT VTLPVPVTVL 180 PPVETTSSSK SSKSSKSNDP PTSLSLSLPG VDSSSEDSNR VTEPPVKNSA PPTPPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	3e-69	MYB family protein