PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI01308.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 257aa    MW: 28755.5 Da    PI: 6.8336
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI01308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.6e-092849325
                S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                 ++C +f+r G C++G++C+F+H
  MCI01308.1 28 VSPCVYFMR-GSCQRGNSCSFSH 49
                579******.************* PP
2zf-CCCH17.38.7e-065478226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k++ C+ff+    C+ G++C F+H+
  MCI01308.1 54 KRPQCKFFFSLQGCRNGESCLFSHD 78
                8999********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
TRAQFPDGSS GQAPEDADYG NFHVNRDVSP CVYFMRGSCQ RGNSCSFSHT FQAKRPQCKF  60
FFSLQGCRNG ESCLFSHDTD RSAASAHRNT CLPEDNAMNS ASLLNLFPKS RDGSILVLDD  120
TSLHFTSSLA CHYDPSKIIS TTSLSETTFT EPSLTGARIL WGLYHPYQTI IAKAGKTLIP  180
WNEVQCVLWF PCFDSYGEDL AGKKKVVQNF FEYLAIRFLA DDLQEVQVII TMNNIRFSQL  240
QVIACARDLL PFNGVIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-07C3H family protein