PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI01344.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 233aa MW: 26447.2 Da PI: 6.5215

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI01344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	80	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT Ede+lv+ vk++G g+W+++ ++ g+ R++k+c++rw ++l MCI01344.1 80 KGTWTSAEDEILVEHVKKYGLGNWNAVQKYSGLARCGKSCRLRWANHL 127 799*****************************************9996 PP
2	Myb_DNA-binding	44.8	2.8e-14	133	176	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +T eE ++ ++++ +G++ W++ a+ m+ gRt++++k++w++ MCI01344.1 133 KGEFTDEEKKKVLELHFSMGNK-WARMAALMP-GRTDNEIKNYWNT 176 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MSSTSSVDDG HKPLKRSWSS LSSEDYSHKT LKRNWSSSSS LDDDCKRIKP SQSLLSGEED 60 DDEDDQGGNS GGGEEGSLKK GTWTSAEDEI LVEHVKKYGL GNWNAVQKYS GLARCGKSCR 120 LRWANHLRPE LKKGEFTDEE KKKVLELHFS MGNKWARMAA LMPGRTDNEI KNYWNTRAKR 180 LRRVGLPLYP EEISKNPLKA DQENGDANEA SQCDETENYN IPVVEFKDYK FHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26960.1	1e-60	MYB family protein