PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI01438.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family B3
Protein Properties Length: 194aa    MW: 22030 Da    PI: 8.3593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI01438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.7e-1963153498
                 E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 vl ps+  + ++++lp  fae++ +g++     ++l++++ r+W v++ yr+++    l++GW eF  +n+L egD++vF+l ++++  l v++fr
  MCI01438.1  63 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTSDARQWPVRCLYRGGR--AKLSQGWYEFTVENNLGEGDVCVFELLRTRDVVLQVTLFR 153
                 7889*******************877743...5***************665555..66************************99999989999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MNIICGTVGA QEAAAENDED GDIRYRFYES ASARKRIVTA EERERAINEA KTFEPTNPFC  60
RVVLRPSYLY RGCIMYLPSC FAEKNLNGVS GFIKLQTSDA RQWPVRCLYR GGRAKLSQGW  120
YEFTVENNLG EGDVCVFELL RTRDVVLQVT LFRVKEDESG LFNPSMQPTQ NVSHAKLLNP  180
HLQHRVSSTK SAKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-80B3 family protein