PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI02142.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LSD

Protein Properties

Length: 74aa MW: 7919.42 Da PI: 8.2612

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI02142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.9	3.9e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+t+ MCI02142.1 7 CNGCRSMLLYPRGATNVCCALCNTI 31 ***********************97 PP
2	zf-LSD1	51.7	1.4e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV MCI02142.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence
MQSQIVCNGC RSMLLYPRGA TNVCCALCNT ITPVPPPGMD MAQLYCGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	6e-38	LSD family protein