PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI03996.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24672 Da    PI: 6.6239
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI03996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.5e-23247449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +n+sn qvtfskRr g++KKA+EL++LC+++va+++fs++ k++ +
  MCI03996.1  2 SNESNLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSEKVFSF 47
                79****************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSNESNLQVT FSKRRSGLFK KASELCTLCG VDVALVVFSP SEKVFSFGHP NIDTVIDRYL  60
SRVPLQTTTT IQFIEAHRNA NLCELNAQLT EINNKLDDEK KRSDELSLLR KATEAQFWWT  120
CPIDGMNRAE LEFLKKALEE LKKLVAQHVN ELAIQDAHTQ TLPFFVGNAS SSSTPLYHQP  180
NPQHAQVFSP QIFQNPMLEP HLFGFNNMGG GGYGPPNFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-46M-type_MADS family protein