PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI04306.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 178aa    MW: 20327.4 Da    PI: 6.5072
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI04306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB102.23.9e-3227123197
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++c+                             +yl++yreleg++
  MCI04306.1  27 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYLHRYRELEGDR 123
                 69**********************************************************9999999999999999999****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MNTRQQVGEQ NNNHSSAGTE QDNECTVREQ DRFMPIANVI RIMRKILPPH AKISDDAKET  60
IQECVSEYIS FITGEANERC HXXXXXXXXX XXXXXXXXXX XXXXXXXXXX MYLHRYRELE  120
GDRTSMRVEP LGKRGMDQYG NALGGFVPQF HIGHPNGGYY GNAPTYMMRD GNNNNAAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-42NF-YB family protein