PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI04541.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 155aa MW: 17180 Da PI: 5.4497

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI04541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.7	5.2e-35	2	87	14	99
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +dC++apyfp e+p+kfanvhk+FGasnv+kll++++ ++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ MCI04541.1 2 PDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNA 87 79*******************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
MPDCIFAPYF PPEEPQKFAN VHKIFGASNV SKLLNEVQAH QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQRQVIRLQK ELDATNADLI RYSTCTDHIL PNNQHQDHQA TRIHEDGGGS 120 SLVHQSPPAN FYYPSPWNND PLGDGNFHTG GGDNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-56	LBD family protein