PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI05756.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 162aa MW: 17871.8 Da PI: 8.8867

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI05756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.7	3e-36	21	136	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssasnsssg.... 88 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ + +++ ++++++++++ ++ g MCI05756.1 21 TGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAKLppwhpigE----NQTlKPQEEQNASA-DTTGmiig 114 79**************************************************************55543320....33322223332222.22223444 PP TCP 89 .....kaaksaakskksqksaa 105 + +++ s+ s+++ + MCI05756.1 115 essesNGYSFHLLSQLSENQGN 136 4333344444444444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MRSTTGGEIV QVEGGHIVRS TGKKDRHSKV YTSKGPRDRR VRLSAHTAIE FYDVQDRLGY 60 DRPSKAVDWL IKKAKSSIDK LAKLPPWHPI GENQTLKPQE EQNASADTTG MIIGESSESN 120 GYSFHLLSQL SENQGNNSSF ISAHDVETNP IPFFPTASST SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-49	TCP family protein