PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI07243.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 218aa MW: 23845.9 Da PI: 5.3839

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI07243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ MCI07243.1 92 FKTKLCCKFRV-GTCPYITNCNFAHS 116 69*******.***********8 PP
2	zf-CCCH	19.5	1.7e-06	168	193	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ MCI07243.1 168 YKGRHCKKFYTEEGCPYGDSCTFLHD 193 78888********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MDYNRDGNVV QIITSGGGGG GADSWSTDQA DWATEDEYRY WNGNEPGETT PSSNSNSEIQ 60 QRSGSEPPSK KSRSNSQDGG SNRAKAIGKM FFKTKLCCKF RVGTCPYITN CNFAHSVEEL 120 RRPPANWQEI VAAHEEERNV LEQPREEFQI PTVGSSTFVG ESMNNRSYKG RHCKKFYTEE 180 GCPYGDSCTF LHDEQSKNRE SVAISLGPGG YGGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	2e-73	C3H family protein