PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI08878.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 161aa MW: 18388.4 Da PI: 8.2145

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI08878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	132	159	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + h ++Er+RR+++ +f L ++P + MCI08878.1 132 QEHVMAERKRREKLTRSFIALSAIVPGL 159 7899**********************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
GMEDLNFLHQ YPMDSLASDA FDNFGFHFDN NYETIPNCFP VETHHPNDNY VAQTRPTKKI 60 KTSSANPSSY STPQLISFEQ LNATPIVSNK EFYSLDYSDV KPTIEKGCSK NKDFAANYDN 120 RANQTRNTTR AQEHVMAERK RREKLTRSFI ALSAIVPGLK K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	143	ERKRRE
2	139	144	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-14	bHLH family protein