PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI09759.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 114aa    MW: 13031.2 Da    PI: 11.0111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI09759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-064365123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  MCI09759.1 43 FICEICNKGFQREQNLQLHRRGH 65
                89*******************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    
MPPLSPTPTP PPPKKKRSLP GMPDPNAEVI ALSPKTLLTT NRFICEICNK GFQREQNLQL  60
HRRGHNMPWK LRQRASEEIR KKVYVCPEPS CVHHNPSRAL GDLTGVKKHF SRKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17082KLRQRASEEIRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-58C2H2 family protein