PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI10238.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 217aa MW: 25057.1 Da PI: 9.6343

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI10238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	32	54	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++Cr+fa G C++G+ C+F H MCI10238.1 32 TRPCRDFAV-GKCRRGSLCNFLHH 54 89*****.***********6 PP
2	zf-CCCH	24.9	3.4e-08	94	115	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF+H+ MCI10238.1 94 EACINFAK-GSCRMGASCKFMHD 115 78****.***********6 PP
3	zf-CCCH	22.6	1.9e-07	158	179	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G +CkF H+ MCI10238.1 158 EVCTNFAK-GRCRMGTSCKFVHD 179 78****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
SRSRSQSRSP PRGFRRDSGV DDRKRMRVVG STRPCRDFAV GKCRRGSLCN FLHHDDNQNR 60 ENSWEGKHRE DRAPRYSATH ERGDHSLKXG RSNEACINFA KGSCRMGASC KFMHDNDSDG 120 YGKVSRDEFT REREDRAPRY PAAHEDGDHS LRRGRSNEVC TNFAKGRCRM GTSCKFVHDN 180 DSDGYGKVFT DEFTREREID RRHRDNSFEQ GGRHASM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	4e-06	C3H family protein