PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI10701.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 194aa MW: 22533.8 Da PI: 10.0921

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI10701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	84	107	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 +kC +C++sF++k +L+ H + MCI10701.1 84 HKCDidNCHMSFTTKAELQLHKHN 107 799999***************866 PP
2	zf-C2H2	16.5	2.3e-05	138	162	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp C+k+F+ ++ Hir+H MCI10701.1 138 FECPwkGCSKCFKWAWAMTEHIRVH 162 89*********************99 PP
3	zf-C2H2	15.1	6.9e-05	168	194	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg sF+ s++ rH r+ H MCI10701.1 168 YQCKveGCGLSFRFISDFSRHRRKtgH 194 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MEHTAMDQFE FNDFIRSPCE RLRPRTGKIA CATTGKSGGD ISQHKEESPV AKRTRRPPEA 60 SVPHKDKKAS VPHKDKKVDV KKPHKCDIDN CHMSFTTKAE LQLHKHNVCP EKGCGKKKFR 120 SHKYTLIHQR VHEDDRPFEC PWKGCSKCFK WAWAMTEHIR VHTGEKPYQC KVEGCGLSFR 180 FISDFSRHRR KTGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	5e-57	C2H2 family protein