PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI10905.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 174aa    MW: 19969.5 Da    PI: 6.0709
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI10905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.1e-101438226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ++++C+f+++ G C++GdrC++ H 
  MCI10905.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                6899********************7 PP
2zf-CCCH21.83.4e-07150173226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ Cr + +   C++G+ C+F+H+
  MCI10905.1 150 REATCRQYEE-NSCNRGGYCNFMHV 173
                 6789**9999.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDIITP  60
GVDPNGQPID PRQIQQHFED FYEDIFLELS KFGYIETLNV CDNLADHMIG NVYVLFREED  120
HAAAALASLH GRFYSGRPIL ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-36C3H family protein