PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI10982.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 161aa MW: 18224.9 Da PI: 8.8053

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI10982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++CgksF + L H r+H MCI10982.1 34 HKCNICGKSFXNGKALGGHRRSH 56 79*******************99 PP
2	zf-C2H2	19.8	2.2e-06	97	118	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++k L H+r+H MCI10982.1 97 RCYICNKKFPTKNALYGHMRSH 118 7********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MKRSRSSLSS DEEEDDDAKI MMKKQEVIVQ KSTHKCNICG KSFXNGKALG GHRRSHFLKK 60 KPNHHQSPEL KTPSKNIRVS CFNDDEDIDG KKNQITRCYI CNKKFPTKNA LYGHMRSHPD 120 RVCKGVSPPS NYDIQNSSSS NNSNKKEDRD DYDDGDDDGG G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-14	C2H2 family protein