PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI11113.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family Whirly
Protein Properties Length: 90aa    MW: 9699.1 Da    PI: 8.0667
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI11113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly111.37.5e-3528255137
      Whirly  55 falsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                 falsatev++l+ +++++sceffhdp++k+sn+G+vrk+l+++P+++  G+fv+l v n++++++++fsvPv+ aefav++++
  MCI11113.1   2 FALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSN--GYFVSLIVVNTVLNTKDNFSVPVTTAEFAVMKTA 82 
                 9*******************************************986..7*******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
RFALSATEVG SLIAMGPQDS CEFFHDPSMK SSNAGQVRKS LSIKPHSNGY FVSLIVVNTV  60
LNTKDNFSVP VTTAEFAVMK TACSVCFFST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-40Whirly family protein