PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI11815.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 255aa    MW: 28316.1 Da    PI: 8.4646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI11815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08104124526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd+C +aHg
  MCI11815.1 104 PCPEFRK-GSCQKGDSCEYAHG 124
                 8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
SKSRRKVLEL FLRGEVSAEL VQGEMDASFS LKKEGGDKKE YPIDISLPDI NNGVYGSDDF  60
RMYSFKVKPC SRAYSHDWTE CPFVHPGENA RRRDPKKYPY SCVPCPEFRK GSCQKGDSCE  120
YAHGVFESWL HPAQYRTRLC KDETGCNRKV CFFAHKPEEL RPVYASTGSA MPSPKSYSAS  180
AIDMTSMSPL SLSSSSLPMS TVSTPPMSPL AGSSSPKSGN SWQNKINLTP PSLQLPGSRL  240
KSALSARDMD LEMEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-106C3H family protein