PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI12224.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 66aa    MW: 7488.85 Da    PI: 10.8977
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI12224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.2e-171048240
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                +i+n+s r+ t+ kR+ gi+KK  EL +LCd+ ++vii 
  MCI12224.1 10 FISNDSARKATYKKRKRGIIKKVRELTILCDVPACVIIS 48
                8************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    
MTRRKVKLAF ISNDSARKAT YKKRKRGIIK KVRELTILCD VPACVIISNP FNSETVAWPD  60
PEGAKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVKLAFISNDSARKATYKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-16M-type_MADS family protein