PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI12331.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family B3
Protein Properties Length: 191aa    MW: 21113.4 Da    PI: 9.8834
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI12331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-314115196
                 EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+kv tpsdv+k++rlv+pk++ae+h                    +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++
  MCI12331.1   4 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqkavdcgaegsaAAAAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQR 102
                 99*************************8888888877666533344999*************************************************8 PP

                 -SS.SEE..EEEE CS
          B3  85 dgr.sefelvvkv 96 
                 + +  +++l++ +
  MCI12331.1 103 STTgPDKQLFIDW 115
                 8776777777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
EDLFEKVVTP SDVGKLNRLV IPKQHAEKHF PLQKAVDCGA EGSAAAAAGK GVLLNFEDVG  60
GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDTVCF QRSTTGPDKQ LFIDWKARKN  120
VNEDGLFVPV GPVVEPVQMV RLFGVNILKL PGSDVNNNGN AIAGLCINGK RREMEMFTLD  180
SCKKPKIIGA L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.16e-63RAV family protein