PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI12569.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 200aa    MW: 22308.8 Da    PI: 4.6468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI12569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.51.5e-08125184159
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvse 59 
                 lv++L++cA+ ++ g+ +la +l++ ++ l a+ +  + + ++a yf  AL++r+++ +++
  MCI12569.1 125 LVHTLMTCADSLQRGNIQLAGSLIEGMQGLlANMNTnSGIGKVAGYFIDALNRRIFG-QNN 184
                 689*************************99765555489****************99.444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MEIEIDSVSS PSKVKEIDGL LADVGYKVKS SELHQVAQNI ERLENVIVNS SSSDISQFAS  60
DTVHYDPSDI GNWVDNLLSE FDHTNSLPYD FSQLPLPDLA QDQHQHHHHQ LKVVTTVEED  120
SAIKLVHTLM TCADSLQRGN IQLAGSLIEG MQGLLANMNT NSGIGKVAGY FIDALNRRIF  180
GQNNIIHIEN DVLYHHYYEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.17e-23GRAS family protein