PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI12705.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 193aa    MW: 21779.8 Da    PI: 8.6338
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI12705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-152365246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g ++  E++ +v+++  +G++ W++Ia+ ++ gRt++++k++w++
       MCI12705.1 23 GHFSDAEEQTIVKLHSVFGNR-WSLIAAQLP-GRTDNDVKNHWNT 65
                     67999****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
LQRCGKSCRL RWTNYLRPDL KHGHFSDAEE QTIVKLHSVF GNRWSLIAAQ LPGRTDNDVK  60
NHWNTKLKKK LSGMGIDPVT HKPFSHLMAE IATTLAPPQA AHLAEAALGC FKDEVLHLLT  120
RKPINYQGQH SNAAMGNNIT DYFNCKPEEK EDTVEKIKFD LSKAIQQEHE MVPTNKPWDS  180
TAATSASFAM PYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-68MYB family protein