PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI13356.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 192aa MW: 21605.4 Da PI: 8.0148

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI13356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.9	2e-23	20	126	29	128
NAM 29 eleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgek 118 +++ + i+e +i++++P++Lp ++++ + +fF+k+ k+y++g rk+r + + +W++tgk+++++ +g + g+kk++v+y+ + k+ek MCI13356.1 20 DEFITtIEEDgGICYTHPQHLP-GISQDGSVAHFFHKAIKAYNSGGRKRRRifdqnIGDLRWHKTGKTRPIFL-DGIQRGCKKIMVLYTTpsNGGKAEK 116 333333777768********.667778899**********999954555444677********.99*********6522666778 PP NAM 119 tdWvmheyrl 128 t+Wv+h+y++ MCI13356.1 117 TNWVVHQYHI 126 ********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MSHLLAKVGA GDSEPHPFID EFITTIEEDG GICYTHPQHL PGISQDGSVA HFFHKAIKAY 60 NSGGRKRRRI FDQNIGDLRW HKTGKTRPIF LDGIQRGCKK IMVLYTTPSN GGKAEKTNWV 120 VHQYHIGREE DEKDGEYVIS KIFYQQQQVK LGKKDDQDVP ETSGEASVAR VVDPVTPNFV 180 TPELPCNKKQ CS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	69	RKRRR
2	66	70	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	3e-80	NAC family protein