PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI14774.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 103aa MW: 11078.5 Da PI: 8.2136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI14774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.7e-09	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +++G+Ck+G+rCk++H+ MCI14774.1 1 MKSGICKFGERCKYHHP 17 89**************8 PP
2	zf-CCCH	40.2	5.5e-13	44	69	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + e+C+++++t tCk+G++CkF H+p MCI14774.1 44 GVEICPYYLKTATCKFGATCKFDHPP 69 689*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence
MKSGICKFGE RCKYHHPIDR STASLSKLQS NVKLTAAGLP RREGVEICPY YLKTATCKFG 60 ATCKFDHPPP GEVMELAKSQ GTSTTNGGET ETNVDVSGSA PEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-33	C3H family protein