PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI15673.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 234aa    MW: 25867.2 Da    PI: 8.8526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI15673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-0885105526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  MCI15673.1  85 PCPDFRK-GACRRGDMCEYAHG 105
                 8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
SPGATPKFTD TAANFTSEKK EYPIDPSLPD IKNSIYATDE FRMFSFKVRP CSRAYSHDWT  60
ECPFVHPGEN ARRRDPRKFH YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL  120
CKDGTSCNRR VCFFAHIAEE LRPLYVSTGS AVPSPRSAAS AANVMDMAAA MSLFPSSPSS  180
ISSMSPSPFA QPLSPSANGI SHSNNAWPQP NVPALHLPGS NVQTSRLRSS LSAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-113C3H family protein