PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCI18776.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 217aa MW: 22708.5 Da PI: 8.3126

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCI18776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.4	1.2e-08	63	88	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C+FaHg+ MCI18776.1 63 KSRICNKFNTAEGCKFGDKCHFAHGE 88 6799********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
NHILFCSTSG CPFGESCHFL HHVPGGYNAA AQMMNLTPAA PPAPRNVAPP PHVXNGSAPS 60 AVKSRICNKF NTAEGCKFGD KCHFAHGEWE LGKAVALSFD DHRGMGPPNV GRFGGHRMEP 120 PPGPTTSFGA NATAKISVEA SLAGAIIGKG GVNSKQICRQ TGAKLSIREH EADPNLRNIE 180 LEGTFEQIKD ASNMVKDLLL TLQMSAPPKT SQGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	4e-45	C3H family protein